Re: [modeller_usage] Structural alignment of multiple chains

[Modeller Caretaker <>]

On 12/21/20 9:57 AM, Tal Weizmann wrote:> I would like to run structural 
alignment using all chains of the same > protein with salign (different 
PDB files). Can I do that with modeller?
I'm not sure whether you mean you want to align chain A of PDB 1abc with 
B of 1abc, or you want to align both A and B of 1abc with chains A and B 
in a different PDB 1xyz. But either way yes, Modeller can do that. In 
the latter case, both chains A and B should be in the same PDB file (if 
you have them in separate files, in most cases they can simply be 
concatenated).

	Ben Webb, Modeller Caretaker
--
             https://salilab.org/modeller/
Modeller mail list: https://salilab.org/mailman/listinfo/modeller_usage