Re: [modeller_usage] How to specify which template (out of multiple) to use for which residues in AutoModel()

[Modeller Caretaker <>]

On 4/7/21 9:00 AM, Steven Truong wrote:
> If I have multiple structure templates, how would I tell when
> AutoModel should use which template?

Modeller uses all aligned templates for a given residue.

> For example, can I use template1.pdb for all residues, except resid
> 50-60 and 100-130, and then use template2.pdb for resid 50-60 and
> 100-130?

If you don't want Modeller to use information from one or more templates
for a given residue range, just make sure your alignment is such that
the target isn't aligned with those templates. See also 
https://salilab.org/modeller/FAQ.html#1 and
https://salilab.org/modeller/FAQ.html#2

	Ben Webb, Modeller Caretaker
--
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