[modeller_usage] Re: Oligomer Missing Loop Residue Restrained Modeling, Broken Loop Issue

[Modeller Caretaker <modeller-care@ucsf.edu>]

On 9/22/22 9:57 AM, Joel Subach wrote:
> In my case which tutorial should I follow for this loop refinement:

The advanced tutorial at
https://salilab.org/modeller/tutorial/advanced.html is the best place to 
start. The Cryo-EM tutorial scores the resulting loop models based on 
their fits into a cryo-EM map, so wouldn't make sense for you unless you 
also have such a map.

Alternatively, you can use the ModLoop web server at
https://modbase.compbio.ucsf.edu/modloop/

	Ben Webb, Modeller Caretaker
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