[modeller_usage] Re: [modeller] sequence mismatch error

[Modeller Caretaker <modeller-care@ucsf.edu>]

On 11/27/23 2:50 PM, Yang, Li-Yen via modeller_usage wrote:
> I am trying to use the modeler comparative tool in *Chimera* to model 
> the structure of a protein (in fasta format) by another similar 
> protein’s structure (in pdb format).
> 
> I first associated this sequence (in fasta) with the corresponding chain 
> in the pdb, and I used the modeller comparative tool to model the structure.
> 
> However, I’m getting this error: _modeller.SequenceMismatchError: 
> read_te_291E> Sequence difference between alignment and pdb :

You would need to see the full error message to be sure what the problem 
is, and that's presumably inside Chimera somewhere. I see you asked a 
similar question on the Chimera mailing list, so hopefully they can help 
you. My guess would be that you have at least one non-standard residue 
in your protein, and Chimera is handling it differently from Modeller.

	Ben Webb, Modeller Caretaker
-- 
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