questions 1.why use pdb _95.pir&bin? 2.another modelling using pdb_95 .pir&bin?
questions 1.why use pdb _95.pir&bin? 2.another modelling protein using pdb_95 .pir&bin?
First, let's answer the question in the subject: to download pdb_95.pir, go to http://salilab.org/modeller/supplemental.html
pdb_95.bin is generated from pdb_95.pir in the very first script in the basic modeling tutorial. I suggest you work through that tutorial.
On 8/11/12 7:33 AM, Nandha Kumar wrote: > 1.why use pdb _95.pir&bin?
pdb_95.pir contains sequences of structures in PDB. We search through it to look for possible templates that have known PDB structures.
> 2.another modelling protein using pdb_95 .pir&bin?
You can query the database using any protein - it's not specific to the tutorial sequence.
Ben Webb, Modeller Caretaker
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Modeller Caretaker -
Nandha Kumar