rm *.tar.Z *.tar.gz *.uue *.log
rm: cannot remove `*.tar.Z': No such file or directory
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rm: cannot remove `*.log': No such file or directory
make: [clean_root] Error 1 (ignored)
(cd examples; ./Clean_all)
rm: cannot remove `*.dih.Z': No such file or directory
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./align-model-steps
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./all-steps
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./commands
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./loop
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./tutorial-model
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./junk
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make: [clean_examples] Error 1 (ignored)
(cd src/main; make clean)
make[1]: Entering directory `/guitar2/home/bozidar/MODELLER/modeller6v1/src/main'
rm -r *.fdb *.lnt *.stt *.tre *.xrf ../*/*.stb ../*/*.cpp ../*/*.o ../*/*.mod *.bif *.int Makefile.old tnm0* /tmp/*.g90 ./*g90
rm: cannot remove `*.fdb': No such file or directory
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rm: cannot remove `/tmp/*.g90': No such file or directory
rm: cannot remove `./*g90': No such file or directory
make[1]: [rmhostobj] Error 1 (ignored)
make[1]: Leaving directory `/guitar2/home/bozidar/MODELLER/modeller6v1/src/main'
(CWD=`pwd`; DIST=`basename ${CWD}`; \
cd ../ ; \
tar 	--exclude '*INT' \
	--exclude '*.F90' \
	--exclude '*.inc' \
	--exclude '*.h' \
-czvf ${DIST}.tar.gz ${DIST} ; \
mv ${DIST}.tar.gz ${DIST}; \
cd ${DIST}; ls -ls ${DIST}.tar.gz)
modeller6v1/
modeller6v1/doc/
modeller6v1/doc/manual.ps
modeller6v1/doc/manual/
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modeller6v1/doc/manual/internals.pl
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modeller6v1/doc/manual.pdf
modeller6v1/examples/
modeller6v1/examples/align-model-steps/
modeller6v1/examples/align-model-steps/model-default.top
modeller6v1/examples/align-model-steps/alignment.seg
modeller6v1/examples/align-model-steps/clean_tops
modeller6v1/examples/align-model-steps/run_tops1
modeller6v1/examples/all-steps/
modeller6v1/examples/all-steps/alignment.seg
modeller6v1/examples/all-steps/1fdx.chn
modeller6v1/examples/all-steps/README
modeller6v1/examples/all-steps/get-model.top
modeller6v1/examples/all-steps/clean_tops
modeller6v1/examples/all-steps/cluster.top
modeller6v1/examples/all-steps/read_alignment.top
modeller6v1/examples/all-steps/malign.top
modeller6v1/examples/all-steps/run_tops1
modeller6v1/examples/all-steps/search.top
modeller6v1/examples/all-steps/test.cod
modeller6v1/examples/atom_files/
modeller6v1/examples/atom_files/pdb1fdn.ent
modeller6v1/examples/atom_files/pdb1fxd.ent
modeller6v1/examples/atom_files/pdb1lzd.ent
modeller6v1/examples/atom_files/pdb2fxb.ent
modeller6v1/examples/atom_files/pdb5fd1.ent
modeller6v1/examples/atom_files/1fca.atm
modeller6v1/examples/atom_files/1clf.atm
modeller6v1/examples/atom_files/2fdn.atm
modeller6v1/examples/atom_files/1fdx.atm
modeller6v1/examples/commands/
modeller6v1/examples/commands/1fdx.swap.atm
modeller6v1/examples/commands/1fas.atm
modeller6v1/examples/commands/align.top
modeller6v1/examples/commands/1nbt.pdb
modeller6v1/examples/commands/2abx.atm
modeller6v1/examples/commands/2ctx.atm
modeller6v1/examples/commands/compare_alignments.top
modeller6v1/examples/commands/add_restraint.top
modeller6v1/examples/commands/align2d.top
modeller6v1/examples/commands/align3d.top
modeller6v1/examples/commands/align_consensus.top
modeller6v1/examples/commands/all_hydrogen.top
modeller6v1/examples/commands/build_model.top
modeller6v1/examples/commands/clean_tops
modeller6v1/examples/commands/color_aln_model.top
modeller6v1/examples/commands/make_topology_model.top
modeller6v1/examples/commands/toxin.ali
modeller6v1/examples/commands/debug_function.sched
modeller6v1/examples/commands/debug_function.top
modeller6v1/examples/commands/define_symmetry.top
modeller6v1/examples/commands/describe.top
modeller6v1/examples/commands/ednf2.pap
modeller6v1/examples/commands/energy.top
modeller6v1/examples/commands/expand_alignment.top
modeller6v1/examples/commands/id_table.top
modeller6v1/examples/commands/iupac_model.top
modeller6v1/examples/commands/make_region.top
modeller6v1/examples/commands/make_restraints.top
modeller6v1/examples/commands/make_schedule.top
modeller6v1/examples/commands/mutate_model.top
modeller6v1/examples/commands/malign.top
modeller6v1/examples/commands/malign3d.top
modeller6v1/examples/commands/orient_model.top
modeller6v1/examples/commands/optimize.top
modeller6v1/examples/commands/patch_disulfides.top
modeller6v1/examples/commands/patch.top
modeller6v1/examples/commands/pick_atoms.top
modeller6v1/examples/commands/pdb1fas.ent
modeller6v1/examples/commands/pdb2abx.ent
modeller6v1/examples/commands/pdb2ctx.ent
modeller6v1/examples/commands/segment_matching.top
modeller6v1/examples/commands/run_tops1
modeller6v1/examples/commands/pick_hot_atoms.top
modeller6v1/examples/commands/pick_restraints.top
modeller6v1/examples/commands/randomize_xyz.top
modeller6v1/examples/commands/read_alignment.top
modeller6v1/examples/commands/read_atom_classes.top
modeller6v1/examples/commands/read_model.top
modeller6v1/examples/commands/read_restyp_lib.top
modeller6v1/examples/commands/reindex_restraints.top
modeller6v1/examples/commands/rename_segments.top
modeller6v1/examples/commands/reorder_atoms.top
modeller6v1/examples/commands/rotate_dihedrals.top
modeller6v1/examples/commands/rotate_model.top
modeller6v1/examples/commands/swap_atoms_in_res.top
modeller6v1/examples/commands/sequence_search.top
modeller6v1/examples/commands/superpose.top
modeller6v1/examples/commands/transfer_xyz.top
modeller6v1/examples/commands/toxin.fasta
modeller6v1/examples/commands/transfer_res_numb.top
modeller6v1/examples/commands/very-short-for-test.cod
modeller6v1/examples/commands/write_data.top
modeller6v1/examples/commands/write_pdb_xref.top
modeller6v1/examples/commands/debug_function.ali
modeller6v1/examples/loop/
modeller6v1/examples/loop/alignment-tiny.ali
modeller6v1/examples/loop/alignment.ali
modeller6v1/examples/loop/clean_tops
modeller6v1/examples/loop/model-loop-tiny.top
modeller6v1/examples/loop/model-loop.top
modeller6v1/examples/loop/run_tops1
modeller6v1/examples/README
modeller6v1/examples/tutorial-model/
modeller6v1/examples/tutorial-model/alignment.ali
modeller6v1/examples/tutorial-model/1fdx.atm
modeller6v1/examples/tutorial-model/5fd1.atm
modeller6v1/examples/tutorial-model/model-default.top
modeller6v1/examples/tutorial-model/clean_tops
modeller6v1/examples/tutorial-model/compare.ali
modeller6v1/examples/tutorial-model/compare.top
modeller6v1/examples/tutorial-model/initial.top
modeller6v1/examples/tutorial-model/model-segment.top
modeller6v1/examples/tutorial-model/model-fast.top
modeller6v1/examples/tutorial-model/model-loop.tmpl
modeller6v1/examples/tutorial-model/model-loop.top
modeller6v1/examples/tutorial-model/pir2pap.top
modeller6v1/examples/tutorial-model/run_tops1
modeller6v1/examples/tutorial-model/model-large.top
modeller6v1/examples/tutorial-model/large.ali
modeller6v1/examples/tutorial-model/1byt.atm.Z
modeller6v1/examples/Clean_all
modeller6v1/examples/Run_tests
modeller6v1/examples/Scan_all_err
modeller6v1/examples/wild_card/
modeller6v1/examples/wild_card/bench/
modeller6v1/examples/wild_card/bench/mod_5.top
modeller6v1/examples/wild_card/bench/align2d_5.ali
modeller6v1/examples/wild_card/bench/pdb1epw.ent.Z
modeller6v1/examples/wild_card/align2d_15.ali.original
modeller6v1/examples/wild_card/1b3q.pdb.Z
modeller6v1/examples/wild_card/clean_tops
modeller6v1/examples/wild_card/mod_15.top
modeller6v1/examples/wild_card/mod_5.top
modeller6v1/examples/wild_card/pdb1epw.ent.Z
modeller6v1/examples/wild_card/run_tops1
modeller6v1/examples/wild_card/align2d_5.ali.original
modeller6v1/examples/junk/
modeller6v1/examples/junk/alignment.ali
modeller6v1/examples/junk/1fdx.atm
modeller6v1/examples/junk/5fd1.atm
modeller6v1/examples/junk/model-default.top
modeller6v1/examples/junk/clean_tops
modeller6v1/examples/junk/compare.ali
modeller6v1/examples/junk/compare.top
modeller6v1/examples/junk/initial.top
modeller6v1/examples/junk/model-segment.top
modeller6v1/examples/junk/model-fast.top
modeller6v1/examples/junk/model-loop.tmpl
modeller6v1/examples/junk/model-loop.top
modeller6v1/examples/junk/junk1.top
modeller6v1/examples/junk/pir2pap.top
modeller6v1/examples/junk/run_tops1
modeller6v1/examples/junk/model-large.top
modeller6v1/examples/junk/large.ali
modeller6v1/examples/junk/1byt.atm.Z
modeller6v1/modlib/
modeller6v1/modlib/120pam.sim.mat
modeller6v1/modlib/CHAINS_3.0_40_XN.cod
modeller6v1/modlib/CHAINS_3.0_40_XN.grp
modeller6v1/modlib/CHAINS_all.seq
modeller6v1/modlib/af_mnchdef.lib
modeller6v1/modlib/as1.sim.mat
modeller6v1/modlib/atmcls-melo.lib
modeller6v1/modlib/atmeqv.lib
modeller6v1/modlib/blosum62.mat
modeller6v1/modlib/blosum62.sim.mat
modeller6v1/modlib/chi1.mdt
modeller6v1/modlib/chi1234.bin
modeller6v1/modlib/chi2.mdt
modeller6v1/modlib/chi3.mdt
modeller6v1/modlib/chi4.mdt
modeller6v1/modlib/feats.lib
modeller6v1/modlib/gonnet.sim.mat
modeller6v1/modlib/id.mat
modeller6v1/modlib/id.sim.mat
modeller6v1/modlib/libs.lib
modeller6v1/modlib/mdt.bin
modeller6v1/modlib/mdt.ini
modeller6v1/modlib/mdt.lib
modeller6v1/modlib/melo1-dist.lib
modeller6v1/modlib/messages.lib
modeller6v1/modlib/mnch.lib
modeller6v1/modlib/mnch1.bin
modeller6v1/modlib/mnch1.lib
modeller6v1/modlib/mnch1.mdt
modeller6v1/modlib/mnch2.lib
modeller6v1/modlib/mnch3.lib
modeller6v1/modlib/mnch4.lib
modeller6v1/modlib/models.lib
modeller6v1/modlib/omega.bin
modeller6v1/modlib/omega.mdt
modeller6v1/modlib/par.lib
modeller6v1/modlib/par_all22_prot_b5.inp
modeller6v1/modlib/par_ca.lib
modeller6v1/modlib/par_ca3_spl.lib
modeller6v1/modlib/param19.inp
modeller6v1/modlib/params.lib
modeller6v1/modlib/parhh.lib
modeller6v1/modlib/parhh2.lib
modeller6v1/modlib/phi.mdt
modeller6v1/modlib/phipsi.bin
modeller6v1/modlib/psi.mdt
modeller6v1/modlib/radii.lib
modeller6v1/modlib/radii14.lib
modeller6v1/modlib/resdih.lib
modeller6v1/modlib/resgrp.lib
modeller6v1/modlib/restyp.lib
modeller6v1/modlib/sched.lib
modeller6v1/modlib/sstruc.lib
modeller6v1/modlib/top.ini
modeller6v1/modlib/top.lib
modeller6v1/modlib/top_all22_prot_b5.inp
modeller6v1/modlib/top_allh.lib
modeller6v1/modlib/top_ca.lib
modeller6v1/modlib/top_ca3.lib
modeller6v1/modlib/top_ca3h.lib
modeller6v1/modlib/top_heav.lib
modeller6v1/modlib/top_mccb.lib
modeller6v1/modlib/top_mcwo.lib
modeller6v1/modlib/top_mnch.lib
modeller6v1/modlib/top_mnss.lib
modeller6v1/modlib/top_polh.lib
modeller6v1/modlib/tophh.lib
modeller6v1/modlib/xs4.mat
modeller6v1/modlib/CHAINS_3.5_95_XN.cod
modeller6v1/modlib/CHAINS_3.5_95_XN.grp
modeller6v1/modlib/top_cacb.lib
modeller6v1/modlib/pdbent.lib
modeller6v1/scripts/
modeller6v1/scripts/logscript.template
modeller6v1/scripts/__align_strs_seq.top
modeller6v1/scripts/__asgl_mod.top
modeller6v1/scripts/__cispeptide.top
modeller6v1/scripts/__cluster.top
modeller6v1/scripts/__complete.top
modeller6v1/scripts/__default_patches.top
modeller6v1/scripts/__defs.top
modeller6v1/scripts/__fit.top
modeller6v1/scripts/__full_homol.top
modeller6v1/scripts/__generate_model.top
modeller6v1/scripts/__getnames.top
modeller6v1/scripts/__homcsr.top
modeller6v1/scripts/__loop.top
modeller6v1/scripts/__mod.top
modeller6v1/scripts/__model.top
modeller6v1/scripts/__multiple_models.top
modeller6v1/scripts/__principal.top
modeller6v1/scripts/__refine.top
modeller6v1/scripts/__sequence_search.top
modeller6v1/scripts/__single_model.top
modeller6v1/scripts/__special.top
modeller6v1/scripts/__spline.top
modeller6v1/scripts/logscript_bash.template
modeller6v1/src/
modeller6v1/src/commands/
modeller6v1/src/definitions/
modeller6v1/src/include/
modeller6v1/src/main/
modeller6v1/src/main/Makefile
modeller6v1/src/main/Makefile.config
modeller6v1/src/main/top.ini
modeller6v1/src/main/mod6v1_alpha
modeller6v1/src/main/mod6v1
modeller6v1/src/main/mod6v1_i386-absoft
modeller6v1/src/main/mod6v1_sun4
modeller6v1/src/main/mod6v1_iris4d
modeller6v1/src/main/mod6v1_i386-lfs
modeller6v1/src/routines/
modeller6v1/modeller.README
modeller6v1/INSTALLATION
modeller6v1/Makefile
modeller6v1/Install
