Re: basic question?

[Andras Fiser <andras AT viol.rockefeller.edu>]

Hello Michael,

Michael Buck wrote:
> 
> Can you directly compare the objective function between two models created
> using different templates?  If not where can you find the Fsymm term used
> in the objective function?

you can not directly compare obj function scores, because these scores
depend on the (violation of ) restraints,  number and type. The
restraints depend on the given template.

> Secondly, are Fstatic and Fdynamic from the objective function comparable
> between two models using different templates?

no, see above. With respect to your question this is only a technical
distincion how to update them during optimization.

Andras

> 
> Thanks for your help,
> 
> Michael
> 
> ************************************************
> Michael Buck
> NCSU Genetics
> mjbuck AT unity.ncsu.edu
> Phone  (919)515-5759
> Fax        (919)515-3355
> http://www4.ncsu.edu/~mjbuck
> *************************************************

-- 
    ,
Andras Fiser, PhD            # phone: (212) 327 7216
The Rockefeller University   # fax:   (212) 327 7540 
Box 270, 1230 York Avenue    # e-mail:fisera AT rockefeller.edu
New York, NY 10021-6399, USA # http://salilab.org/~andras