Re: [modeller_usage] missing loop

[Qinghua Liao <>]

Thanks Ben!

Best,
Qinghua

On 5/15/20 9:01 PM, Modeller Caretaker wrote:
> On 5/14/20 4:11 PM, Qinghua Liao wrote:
> > Thanks a lot for your guide. I just figured it out to use loopmodel 
> > to optimize the loop.
> > I am going to build up a large number of conformations of the loop by 
> > setting a.loop.ending_model to a large value.
> >
> > Just another question, will set "a.ending_model" more than 1 help a 
> > little bit, as the total number will be a.ending_model * 
> > a.loop.ending_model?
>
> a.ending_model controls how many models of the entire protein are 
> generated. It makes sense to increase that from 1, particularly if you 
> are not sure where your loop termini should be.
>
>     Ben Webb, Modeller Caretaker