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Re: [modeller_usage] Change ROOT_NAME for automodel.make()

On 8/7/20 2:21 PM, Brian Wiley wrote:

a = automodel(env,
               alnfile = 'TSC2_6ssh.ali',
               knowns = ('6ssh'),
               sequence = 'TSC2_HUMAN')

a.make() # Here I want the prefix to be 'TSC2_6ssh' and not
'TSC2_HUMAN'  so all files and pdb file at end would be
TSC2_6ssh.B99990001.pdb
automodel is written under the assumption that files are named for the sequence. If you want to name the output PDB files differently, that's straightforward; just override get_model_filename() as per 
https://salilab.org/modeller/9.24/manual/node76.html
If you want to name the other output files differently, there isn't currently a mechanism for that, but it would be easy enough to modify the Python code to do so. 

	Ben Webb, Modeller Caretaker
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