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[modeller_usage] Adding glycans in AutoModel?

Dear Modeller Mailing List,

I was hoping to ask if there is a way to automate glycan-building in Modeller.  I’ve been able to get all residues/atoms built using AutoModel.  However, I lose the glycan information when using AutoModel.  Is there another program that interfaces well with Modeller, or is there a class in Modeller that can add glycans at known positions (e.g. if I know NAG is attached to residue 6, can I add that to the PDB output somehow?).

Thank you!
Steven Truong
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Cambridge University