22 Feb
2005
22 Feb
'05
12:40 p.m.
David Piper wrote: > 1) What level of refinement or MD_LEVEL is used as a > default?
refine_1. See bin/__defs.top and bin/__refine.top.
> 2) After modelling, if there are "bumps" or poorly defined bond lengths > or angles (based on ProCheck output), what is the preferred way of > optimizing them?
You can use more rigorous refinement, or build more models and take the best ones.
Ben Webb, Modeller Caretaker
--
modeller-care@salilab.org http://www.salilab.org/modeller/
Modeller mail list: http://salilab.org/mailman/listinfo/modeller_usage