Modeller_Usage Mailing List (by date)

Thread Index

Re: [modeller_usage] Is it possible to change the output file directory? 2012/01/03
- From: Modeller Caretaker <>
Re: [modeller_usage] Error in opening log file. 2012/01/03
- From: Modeller Caretaker <>
[modeller_usage] CSA incorporation in salign 2012/01/04
- From: Ashish Runthala <>
Re: [modeller_usage] CSA incorporation in salign 2012/01/05
- From: Modeller Caretaker <>
[modeller_usage] Plot profile of All or selected assessment methods 2012/01/06
- From: junior <>
Re: [modeller_usage] What is Modeller v9.10 , can you explain to me? 2012/01/06
- From: Modeller Caretaker <>
[modeller_usage] Is there a way to it? 2012/01/10
- From: Ashish Runthala <>
Re: [modeller_usage] Is there a way to it? 2012/01/10
- From: Modeller Caretaker <>
Re: [modeller_usage] Is there a way to it? 2012/01/11
- From: Modeller Caretaker <>
[modeller_usage] Import Error: No module named _modeler 2012/01/28
- From: "Naresh" <>
Re: [modeller_usage] Import Error: No module named _modeler 2012/01/28
- From: Modeller Caretaker <>
[modeller_usage] modeller.ModellerError: read_al_373E> Protein specified in ALIGN_CODES(i) was not found in the alignment file; ALIGN_CODES( 1) = 3O96 2012/01/29
- From: "Naresh" <>
Re: [modeller_usage] modeller.ModellerError: read_al_373E> Protein specified in ALIGN_CODES(i) was not found in the alignment file; ALIGN_CODES( 1) = 3O96 2012/01/29
- From: Modeller Caretaker <>
[modeller_usage] how to analyse the output file of align2d.py 2012/01/29
- From: "Naresh" <>
Re: [modeller_usage] how to analyse the output file of align2d.py 2012/01/30
- From: Modeller Caretaker <>
Re: [modeller_usage] Need Help getting started 2012/01/30
- From: "Henry, Marcia B" <>
[modeller_usage] Need Help getting started 2012/01/30
- From: "Henry, Marcia B" <>
Re: [modeller_usage] Need Help getting started 2012/01/30
- From: Modeller Caretaker <>
[modeller_usage] Phosphoserine residue 2012/01/30
- From: Mike Bramson <>
[modeller_usage] (no subject) 2012/01/31
- From: Francesco Pietra <>
Re: [modeller_usage] (no subject) 2012/01/31
- From: Francesco Pietra <>
[modeller_usage] libraries issue 2012/01/31
- From: Francesco Pietra <>
Re: [modeller_usage] libraries issue 2012/01/31
- From: Modeller Caretaker <>
[modeller_usage] generating homology models of reduced disulfide bonds 2012/02/01
- From: Stephanie Schaefer <>
[modeller_usage] problems with filling missing residue without moving exing ones 2012/02/02
- From: Francesco Pietra <>
Re: [modeller_usage] problems with filling missing residue without moving exing ones 2012/02/02
- From: Modeller Caretaker <>
Re: [modeller_usage] generating homology models of reduced disulfide bonds 2012/02/02
- From: Modeller Caretaker <>
[modeller_usage] Regarding Model Clustering 2012/02/02
- From: Ashish Runthala <>
[modeller_usage] Regarding Scoring Parameters 2012/02/08
- From: Ashish Runthala <>
[modeller_usage] modeling of movement of domain 2012/02/09
- From: "Ahmadreza Mehdipour" <>
Re: [modeller_usage] Regarding Scoring Parameters 2012/02/09
- From: Mensur Dlakic <>
[modeller_usage] (no subject) 2012/02/09
- From: ARVIND PAL <>
Re: [modeller_usage] modeling of movement of domain 2012/02/10
- From: Modeller Caretaker <>
Re: [modeller_usage] (no subject) 2012/02/10
- From: Modeller Caretaker <>
Re: [modeller_usage] modeling of movement of domain 2012/02/11
- From: "Ahmadreza Mehdipour" <>
Re: [modeller_usage] modeling of movement of domain 2012/02/11
- From: Modeller Caretaker <>
[modeller_usage] run two file or two restrained together 2012/02/13
- From: Pablo Fernandez Millan <>
Re: [modeller_usage] run two file or two restrained together 2012/02/13
- From: Modeller Caretaker <>
[modeller_usage] MAPRES limit 2012/02/14
- From: "Johs, Alexander" <>
Re: [modeller_usage] MAPRES limit 2012/02/14
- From: Modeller Caretaker <>
[modeller_usage] error 2012/02/16
- From: Rana Adnantahir <>
Re: [modeller_usage] error 2012/02/16
- From: Modeller Caretaker <>
[modeller_usage] to generate the DOPE plot 2012/02/17
- From: Xiao-Ping Zhang <>
Re: [modeller_usage] to generate the DOPE plot 2012/02/17
- From: Modeller Caretaker <>
Re: [modeller_usage] to generate the DOPE plot 2012/02/17
- From: Xiao-Ping Zhang <>
Re: [modeller_usage] to generate the DOPE plot 2012/02/17
- From: Modeller Caretaker <>
Re: [modeller_usage] to generate the DOPE plot 2012/02/17
- From: Modeller Caretaker <>
[modeller_usage] error in Virutualbox 2012/02/18
- From: albert <>
Re: [modeller_usage] error in Virutualbox 2012/02/18
- From: Modeller Caretaker <>
[modeller_usage] loop error 2012/02/19
- From: albert <>
Re: [modeller_usage] loop error 2012/02/19
- From: Modeller Caretaker <>
[modeller_usage] Confusion between two models 2012/02/19
- From: hari krishna <>
[modeller_usage] energy function scaling factors 2012/02/20
- From: Armin Meier <>
Re: [modeller_usage] energy function scaling factors 2012/02/20
- From: Modeller Caretaker <>
[modeller_usage] How to use MODELLER as an ordinary Python module? 2012/02/21
- From: Desmond Kho <>
Re: [modeller_usage] How to use MODELLER as an ordinary Python module? 2012/02/21
- From: Modeller Caretaker <>
Re: [modeller_usage] How to use MODELLER as an ordinary Python module? 2012/02/21
- From: Modeller Caretaker <>
[modeller_usage] Error: Ran out of slaves to run tasks 2012/02/21
- From: Xiao-Ping Zhang <>
Re: [modeller_usage] Error: Ran out of slaves to run tasks 2012/02/21
- From: Modeller Caretaker <>
[modeller_usage] (no subject) 2012/02/21
- From: ARVIND PAL <>
Re: [modeller_usage] Error: Ran out of slaves to run tasks 2012/02/23
- From: Modeller Caretaker <>
Re: [modeller_usage] Error: Ran out of slaves to run tasks 2012/02/23
- From: Xiao-Ping Zhang <>
[modeller_usage] Special g 2012/02/26
- From: zhoujinming <>
[modeller_usage] a question about loop refinement 2012/02/29
- From:
Re: [modeller_usage] Error running build_profile.py :Not enough bins in histogram 2012/02/29
- From: Susana Tomasio <>
Re: [modeller_usage] Error running build_profile.py :Not enough bins in histogram 2012/02/29
- From: Modeller Caretaker <>
Re: [modeller_usage] Error running build_profile.py :Not enough bins in histogram 2012/02/29
- From: Susana Tomasio <>
Re: [modeller_usage] a question about loop refinement 2012/02/29
- From: Modeller Caretaker <>
[modeller_usage] Template selection criteria. 2012/03/01
- From: ARVIND PAL <>
Re: [modeller_usage] Template selection criteria. 2012/03/01
- From: Modeller Caretaker <>
[modeller_usage] a 20 aa loop 2012/03/02
- From: albert <>
[modeller_usage] PDF score question 2012/03/02
- From: albert <>
Re: [modeller_usage] PDF score question 2012/03/02
- From: Modeller Caretaker <>
Re: [modeller_usage] a 20 aa loop 2012/03/02
- From: Modeller Caretaker <>
Re: [modeller_usage] PDF score question 2012/03/02
- From: albert <>
Re: [modeller_usage] PDF score question 2012/03/02
- From: albert <>
Re: [modeller_usage] PDF score question 2012/03/03
- From: Modeller Caretaker <>
[modeller_usage] Regarding Usage of BLOSUM Matrix 2012/03/03
- From: Ashish Runthala <>
Re: [modeller_usage] modeller_usage Digest, Vol 11, Issue 25 2012/03/03
- From: Ashish Runthala <>
[modeller_usage] Regarding BLOSUM MATRICES & MODELLER ALIGNMENT 2012/03/04
- From: Ashish Runthala <>
[modeller_usage] Modeller9.10 on Centos 6.2 2012/03/06
- From: Irene Newhouse <>
Re: [modeller_usage] Modeller9.10 on Centos 6.2 2012/03/06
- From: Modeller Caretaker <>
Re: [modeller_usage] Modeller9.10 on Centos 6.2 2012/03/07
- From: Irene Newhouse <>
Re: [modeller_usage] Modeller9.10 on Centos 6.2 2012/03/07
- From: Modeller Caretaker <>
Re: [modeller_usage] Modeller9.10 on Centos 6.2 2012/03/07
- From: Irene Newhouse <>
[modeller_usage] (no subject) 2012/03/11
- From: pawan raghav <>
[modeller_usage] Regarding .tree 2012/03/12
- From: Ashish Runthala <>
[modeller_usage] Loop Modeling in a Protein-DNA Complex 2012/03/15
- From: Alexander Predeus <>
[no subject] 2012/03/15
- From: Unknown
Re: [modeller_usage] Loop Modeling in a Protein-DNA Complex 2012/03/15
- From: Modeller Caretaker <>
Re: [modeller_usage] Loop Modeling in a Protein-DNA Complex 2012/03/16
- From: Alexander Predeus <>
Re: [modeller_usage] Loop Modeling in a Protein-DNA Complex 2012/03/16
- From: Modeller Caretaker <>
Re: [modeller_usage] modeller_usage Digest, Vol 11, Issue 30 2012/03/16
- From: Alexander Predeus <>
[modeller_usage] ALIGN_CODES(i) error, Again 2012/03/19
- From: "Zumot, Elia Nabil" <>
Re: [modeller_usage] ALIGN_CODES(i) error, Again 2012/03/19
- From: Robert Campbell <>
[modeller_usage] loop refinement 2012/03/21
- From:
[modeller_usage] calculate energy for a given structure with MODELLER's C API and derivative with respect to all coordinates (x, y, z) 2012/03/22
- From: Valerio Lupperger <>
[modeller_usage] Is it possible to calculate energy for the given structure with MODELLER's C API and derivative with respect to all coordinates (x, y, z)? 2012/03/22
- From: Valerio Lupperger <>
Re: [modeller_usage] 2. loop refinement () from modeller_usage Digest, Vol 11, Issue 32 2012/03/22
- From: "Jan H. Löhr" <>
[modeller_usage] homology modelling with multiple subunits 2012/03/22
- From: "Zumot, Elia Nabil" <>
Re: [modeller_usage] Is it possible to calculate energy for the given structure with MODELLER's C API and derivative with respect to all coordinates (x, y, z)? 2012/03/22
- From: Modeller Caretaker <>
Re: [modeller_usage] homology modelling with multiple subunits 2012/03/22
- From: Modeller Caretaker <>
[modeller_usage] Regarding protein 3D structure modeling 2012/03/23
- From: vishal Nemaysh <>
Re: [modeller_usage] Regarding protein 3D structure modeling 2012/03/24
- From: Modeller Caretaker <>
[modeller_usage] mutate_selection.py 2012/03/26
- From: ARVIND PAL <>
Re: [modeller_usage] mutate_selection.py 2012/03/26
- From: Modeller Caretaker <>
Re: [modeller_usage] Regarding protein 3D structure modeling 2012/03/26
- From: Modeller Caretaker <>
[modeller_usage] DNA-protein complex modelling discrepancy!! 2012/03/28
- From: Sumedha Roy <>
[modeller_usage] Model Clustering 2012/03/28
- From: Ashish Runthala <>
Re: [modeller_usage] modeller_usage Digest, Vol 11, Issue 35 2012/03/28
- From: Ashish Runthala <>
Re: [modeller_usage] modeller_usage Digest, Vol 11, Issue 35 2012/03/29
- From: Sumedha Roy <>
Re: [modeller_usage] DNA-protein complex modelling discrepancy!! 2012/03/29
- From: Modeller Caretaker <>
[modeller_usage] model quality: GA341, DOPE and zDOPE 2012/03/29
- From: richard k belew <>
Re: [modeller_usage] model quality: GA341, DOPE and zDOPE 2012/03/29
- From: Modeller Caretaker <>
Re: [modeller_usage] model quality: GA341, DOPE and zDOPE 2012/03/29
- From: richard k belew <>
Re: [modeller_usage] model quality: GA341, DOPE and zDOPE 2012/03/29
- From: Modeller Caretaker <>
[modeller_usage] rmsd from template 2012/04/02
- From: Matthias Schmidt <>
Re: [modeller_usage] rmsd from template 2012/04/02
- From: Modeller Caretaker <>
[modeller_usage] problem in modeling protein with ligand 2012/04/05
- From: NUTAN CHAUHAN <>
Re: [modeller_usage] problem in modeling protein with ligand 2012/04/05
- From: flavio seixas <>
[modeller_usage] problem with Chain.join() 2012/04/05
- From: Jan Kosinski <>
Re: [modeller_usage] problem with Chain.join() 2012/04/05
- From: Modeller Caretaker <>
Re: [modeller_usage] problem with Chain.join() 2012/04/06
- From: Jan Kosinski <>
[modeller_usage] In what are the initial structures different? 2012/04/08
- From: BIN ZHANG <>
Re: [modeller_usage] Error in ALIGN_CODES(i) 2012/04/09
- From: Modeller Caretaker <>
Re: [modeller_usage] In what are the initial structures different? 2012/04/09
- From: Modeller Caretaker <>
Re: [modeller_usage] modeller_usage Digest, Vol 11, Issue 42 2012/04/09
- From: Ashish Runthala <>
Re: [modeller_usage] modeller_usage Digest, Vol 11, Issue 42 2012/04/09
- From: Ashish Runthala <>
Re: [modeller_usage] modeller_usage Digest, Vol 11, Issue 42 2012/04/09
- From: Modeller Caretaker <>
[modeller_usage] calculating DOPE score 2012/04/09
- From: NUTAN CHAUHAN <>
Re: [modeller_usage] calculating DOPE score 2012/04/09
- From: Modeller Caretaker <>
Re: [modeller_usage] modeller_usage Digest, Vol 11, Issue 44 2012/04/10
- From: Ashish Runthala <>
Re: [modeller_usage] modeller_usage Digest, Vol 11, Issue 44 2012/04/10
- From: Modeller Caretaker <>
[modeller_usage] Regarding Model Building 2012/04/22
- From: Ashish Runthala <>
Re: [modeller_usage] Regarding Model Building 2012/04/23
- From: Modeller Caretaker <>
[modeller_usage] 2 BLK in one model 2012/04/24
- From: Isaure Chauvot de Beauchêne <>
[modeller_usage] Loop refinement: setting the right anchors in multichain models 2012/04/25
- From: Jérôme Hénin <>
Re: [modeller_usage] Loop refinement: setting the right anchors in multichain models 2012/04/26
- From: Thomas Evangelidis <>
Re: [modeller_usage] Loop refinement: setting the right anchors in multichain models 2012/04/26
- From: Jérôme Hénin <>
[modeller_usage] modelling with hetatms 2012/04/26
- From: "Offord, Victoria" <>
[modeller_usage] Invitation to connect on LinkedIn 2012/04/26
- From: Uday Kumar <>
[modeller_usage] Invitation to connect on LinkedIn 2012/04/26
- From: Uday Kumar <>
Re: [modeller_usage] (no subject) 2012/04/27
- From: sree jyothi <>
[modeller_usage] procheck problem. 2012/04/30
- From: vishal Nemaysh <>
Re: [modeller_usage] procheck problem. 2012/04/30
- From: Thomas Evangelidis <>
Re: [modeller_usage] modelling with hetatms 2012/04/30
- From: Joel Tyndall <>
Re: [modeller_usage] procheck problem. 2012/04/30
- From: flavio seixas <>
Re: [modeller_usage] modelling with hetatms 2012/05/01
- From: Modeller Caretaker <>
Re: [modeller_usage] Loop refinement: setting the right anchors in multichain models 2012/05/01
- From: Modeller Caretaker <>
Re: [modeller_usage] modelling with hetatms 2012/05/01
- From: "Offord, Victoria" <>
Re: [modeller_usage] 2 BLK in one model 2012/05/01
- From: Modeller Caretaker <>
[modeller_usage] missing residues 2012/05/03
- From: Mary Varughese <>
Re: [modeller_usage] missing residues 2012/05/03
- From: Modeller Caretaker <>
Re: [modeller_usage] missing residues 2012/05/04
- From: Mary Varughese <>
Re: [modeller_usage] modeller_usage Digest, Vol 11, Issue 54 2012/05/04
- From: Ashish Runthala <>
Re: [modeller_usage] missing residues 2012/05/04
- From: Modeller Caretaker <>
[modeller_usage] Question about alignment.check() 2012/05/05
- From: M <>
Re: [modeller_usage] Question about alignment.check() 2012/05/05
- From: Modeller Caretaker <>
[modeller_usage] modeling different conformations of a protein from related structures 2012/05/07
- From: EGY <>
Re: [modeller_usage] modeling different conformations of a protein from related structures 2012/05/07
- From: Thomas Evangelidis <>
Re: [modeller_usage] modeling different conformations of a protein from related structures 2012/05/07
- From: Thomas Evangelidis <>
Re: [modeller_usage] modeling different conformations of a protein from related structures 2012/05/07
- From: EGY <>
Re: [modeller_usage] modeling different conformations of a protein from related structures 2012/05/07
- From: Modeller Caretaker <>
[modeller_usage] Regarding Constraints covered in the Salign_Multiple_Struc.py 2012/05/08
- From: Ashish Runthala <>
Re: [modeller_usage] Regarding Constraints covered in the Salign_Multiple_Struc.py 2012/05/13
- From: Ashish Runthala <>
[modeller_usage] modeller.parallel.communicator.RemoteError 2012/05/15
- From: Xiao-Ping Zhang <>
Re: [modeller_usage] modeller.parallel.communicator.RemoteError 2012/05/16
- From: Modeller Caretaker <>
[modeller_usage] modeling homodimer with hetero atoms 2012/05/18
- From: NUTAN CHAUHAN <>
Re: [modeller_usage] modeling homodimer with hetero atoms 2012/05/18
- From: Modeller Caretaker <>
Re: [modeller_usage] modeling homodimer with hetero atoms 2012/05/18
- From: NUTAN CHAUHAN <>
Re: [modeller_usage] modeling homodimer with hetero atoms 2012/05/18
- From: Modeller Caretaker <>

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